Litcius/Paper detail

Multi-GPU RI-HF Energies and Analytic Gradients─Toward High-Throughput Ab Initio Molecular Dynamics

Ryan Stocks, Elise Palethorpe, Giuseppe M. J. Barca

2024Journal of Chemical Theory and Computation20 citationsDOI

Abstract

This article presents an optimized algorithm and implementation for calculating resolution-of-the-identity Hartree-Fock (RI-HF) energies and analytic gradients using multiple graphics processing units (GPUs). The algorithm is especially designed for high throughput ab initio molecular dynamics simulations of small and medium size molecules (10-100 atoms). Key innovations of this work include the exploitation of multi-GPU parallelism and a workload balancing scheme that efficiently distributes computational tasks among GPUs. Our implementation also employs techniques for symmetry utilization, integral screening, and leveraging sparsity to optimize memory usage. Computational results show that the implementation achieves significant performance improvements, including over 3 × speedups in single GPU AIMD throughput compared to previous GPU-accelerated RI-HF and traditional HF methods. Furthermore, utilizing multiple GPUs can provide superlinear speedup when the additional aggregate GPU memory allows for the storage of decompressed three-center integrals.

Topics & Concepts

Computer scienceSpeedupThroughputComputational scienceParallel computingGraphicsCUDAGraphics processing unitGeneral-purpose computing on graphics processing unitsShared memoryAb initioChemistryComputer graphics (images)TelecommunicationsOrganic chemistryWirelessAdvanced NMR Techniques and ApplicationsParallel Computing and Optimization TechniquesAdvanced Data Storage Technologies
Multi-GPU RI-HF Energies and Analytic Gradients─Toward High-Throughput Ab Initio Molecular Dynamics | Litcius