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Design and evolution of artificial enzyme with in-situ biosynthesized non-canonical amino acid

Wei Huang, Shiping Wang, Ya Wei, Yuting Bai, Zhixi Zhu, Dejing Yin, Tao Liu, Xiang Sheng, Zhi Zhou

2025Nature Communications8 citationsDOIOpen Access PDF

Abstract

The creation of designer enzymes by incorporating genetically encoded non-canonical amino acids (ncAAs) could significantly expand the catalytic repertoire of the enzyme universe for abiological transformations. However, due to the limited availability of ncAAs with potential catalytic functional groups, progress in this field remains relatively slow. Herein, we present an efficient approach for enzyme design with organocatalytic ncAAs by integrating the biosynthesis and genetic incorporation of ncAAs harboring abiological catalytic residues into the protein scaffold. Based on this ncAAs in situ biosynthesis and incorporation system, our designer enzyme with an unnatural mercapto-aniline residue is created efficiently by feeding thiols to E. coli and shows significant catalytic activity for an enantioselective Friedel-Crafts alkylation reaction with excellent enantioselectivity and reactivity after directed evolution. This study provides a universal strategy for designing artificial enzymes with xenobiotic catalytic moieties with diverse biosynthesized ncAAs, thereby expanding the toolbox of biocatalysts for abiological transformations. Enzyme design with non-canonical amino acids has achieved rapid progress in biocatalysis. Here, the authors present an efficient strategy for the design of artificial enzymes with unnatural catalytic center by the combination of non-canonical amino acid biosynthesis and genetic incorporation into protein of interest.

Topics & Concepts

EnzymeBiochemistryChemistryAmino acidBiosynthesisProtein designProtein engineeringSynthetic biologyResidue (chemistry)Directed evolutionEnantioselective synthesisAmino acid residueActive siteEscherichia coliBiologyMetabolic pathwayMetabolic intermediateChemical biologyBiocatalysisPeptide BiosynthesisStereochemistryEnzyme catalysisArtificial enzymeMetabolic engineeringAminoacyl tRNA synthetasePeptide sequenceDirected Molecular EvolutionCatalysisLysineProtein structureEnzyme Catalysis and ImmobilizationEnzyme Structure and FunctionMicrobial Metabolic Engineering and Bioproduction