dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit
Daniel Bunis, Jared Andrews, Gabriela K. Fragiadakis, Trevor D. Burt, Marina Sirota
Abstract
SUMMARY: A visualization suite for major forms of bulk and single-cell RNAseq data in R. dittoSeq is color blindness-friendly by default, robustly documented to power ease-of-use and allows highly customizable generation of both daily-use and publication-quality figures. AVAILABILITY AND IMPLEMENTATION: dittoSeq is an R package available through Bioconductor via an open source MIT license. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Topics & Concepts
BioconductorSuiteVisualizationComputer scienceUser FriendlyMIT LicenseLicenseOpen sourceSoftwareR packagePlug-inData miningOperating systemProgramming languageBiologyArchaeologyGeneBiochemistryHistorySingle-cell and spatial transcriptomicsMolecular Biology Techniques and ApplicationsGene expression and cancer classification