Rtpca: an R package for differential thermal proximity coaggregation analysis
Nils Kurzawa, André Mateus, Mikhail M. Savitski
Abstract
SUMMARY: Rtpca is an R package implementing methods for inferring protein-protein interactions (PPIs) based on thermal proteome profiling experiments of a single condition or in a differential setting via an approach called thermal proximity coaggregation. It offers user-friendly tools to explore datasets for their PPI predictive performance and easily integrates with available R packages. AVAILABILITY AND IMPLEMENTATION: Rtpca is available from Bioconductor (https://bioconductor.org/packages/Rtpca). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Topics & Concepts
BioconductorR packageComputer scienceSoftware packageProfiling (computer programming)ProteomeDifferential (mechanical device)SoftwareData miningBioinformaticsComputational scienceProgramming languageBiologyEngineeringGeneAerospace engineeringBiochemistryBioinformatics and Genomic NetworksAdvanced Biosensing Techniques and ApplicationsAdvanced Proteomics Techniques and Applications