Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes
Aleksandr Zaitsev, Maksim Chelushkin, Daniiar Dyikanov, Ilya Cheremushkin, Boris Shpak, Krystle Nomie, Vladimir Zyrin, Ekaterina Nuzhdina, Yaroslav Lozinsky, Anastasia Zotova, Sandrine Degryse, Nikita Kotlov, Artur Baisangurov, Vladimir Shatsky, Daria Afenteva, A. A. Kuznetsov, Susan Raju Paul, Diane Davies, Patrick M. Reeves, Michael Lanuti, Michael F. Goldberg, Cagdas Tazearslan, Madison Chasse, Iris Wang, Mary Abdou, Sharon M Aslanian, Samuel W. Andrewes, James J. Hsieh, Akshaya Ramachandran, Yang Lyu, Ilia Galkin, Viktor Svekolkin, Leandro Cerchietti, Mark C. Poznansky, Ravshan Ataullakhanov, Nathan Fowler, Alexander Bagaev
Topics & Concepts
AlgorithmTranscriptomeDeconvolutionBiologyTumor microenvironmentRobustness (evolution)RNAComputational biologyGene expressionComputer scienceArtificial intelligenceGeneCancer researchTumor cellsGeneticsSingle-cell and spatial transcriptomicsCancer Genomics and DiagnosticsCancer Cells and Metastasis