TRviz: a Python library for decomposing and visualizing tandem repeat sequences
Jonghun Park, Eli J. Kaufman, Paul N. Valdmanis, Vineet Bafna
Abstract
Summary: TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences. Availability and implementation: TRviz is an open-source Python library and freely available at https://github.com/Jong-hun-Park/trviz. Detailed documentation is available at https://trviz.readthedocs.io. Supplementary information: online.
Topics & Concepts
Python (programming language)Computer scienceDocumentationOpen sourceProgramming languageTandem repeatWorld Wide WebComputational biologyInformation retrievalBiologySoftwareGeneticsGenomeGeneGenomics and Phylogenetic StudiesRNA and protein synthesis mechanismsRNA modifications and cancer