Anchored screening identifies transcription factor blueprints underlying dendritic cell diversity and subset-specific anti-tumor immunity
Luís Henriques‐Oliveira, Abigail Altman, Ilia Kurochkin, Ervin Ascic, Evelyn Halitzki, Andreea-Medeea Matei, Diogo Pértiga-Cabral, Isabel Ulmert, Signe Holst, M. Nair, Pedro P. Cunha, Sun‐Mi Park, Stefano Vergani, Michael G. Kharas, Joan Yuan, Katharina Lahl, Fábio F. Rosa, Cristiana F. Pires, Carlos‐Filipe Pereira
Abstract
Transcription factor cooperation is essential for specifying the heterogeneous dendritic cell (DC) lineages that orchestrate adaptive immunity, yet how it drives subset diversification remains poorly understood. Here, we employed a sequential anchored screen of 70 transcription factors using direct cellular reprogramming to identify regulators that specify type 2 conventional DCs (cDC2s) and plasmacytoid DCs (pDCs). We identified PU.1, IRF4, and PRDM1 as inducers of a pro-inflammatory cDC2B-like fate and SPIB, IRF8, and IKZF2 as mediators of an immature lymphoid DC program. Transcriptomic profiling linked these triads to lineage-specific signatures and demonstrated their requirement for subset identity. Mechanistically, lineage divergence was driven by chromatin co-engagement at subset-specific sites early in reprogramming. Functionally, reprogrammed DCs employed distinct immune mechanisms to elicit orthogonal anti-tumor responses in different tumor models. Collectively, our findings uncover transcriptional circuits that control DC diversification and pave the way to generate patient-tailored DC subsets for cancer immunotherapy.