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QPPLab: A generally applicable software package for detecting, analyzing, and visualizing large-scale quasiperiodic spatiotemporal patterns (QPPs) of brain activity

Nan Xu, Behnaz Yousefi, Nmachi Anumba, Theodore J. LaGrow, Xiaodi Zhang, Shella Keilholz

2025SoftwareX10 citationsDOIOpen Access PDF

Abstract

, an open-source MATLAB-based toolbox for detecting, analyzing, and visualizing QPPs from fMRI time series. QPPLab integrates correlation-based iterative algorithms, supports customizable parameter settings, and features automated workflows to simplify analysis. Processing times vary depending on dataset size and the selected mode, with the fast detection mode completing analyses that can be 4-6 times faster than the robust detection mode. Results include spatiotemporal templates of QPPs, sliding correlation time courses, and functional connectivity maps. By reducing manual parameter adjustments and providing user-friendly tools, QPPLab enables researchers to efficiently study QPPs across diverse datasets and species, advancing our understanding of intrinsic brain dynamics.

Topics & Concepts

Computer scienceR packageScale (ratio)SoftwareSoftware packageVisualizationQuasiperiodic functionComputational scienceData miningProgramming languageCartographyPhysicsCondensed matter physicsGeographyFunctional Brain Connectivity StudiesNeural dynamics and brain functionFractal and DNA sequence analysis
QPPLab: A generally applicable software package for detecting, analyzing, and visualizing large-scale quasiperiodic spatiotemporal patterns (QPPs) of brain activity | Litcius