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Spatial transcriptomics reveals tumor microenvironment heterogeneity in EBV positive diffuse large B cell lymphoma

Mei-yao He, Meng Liu, Jiayin Yuan, Jin Lv, Wei Li, Qianwen Yan, Yujiao Tang, Luyi Wang, Li Guo, Fang Liu

2025Scientific Reports11 citationsDOIOpen Access PDF

Abstract

Accumulating research suggests that Epstein-Barr Virus-positive Diffuse Large B-cell Lymphoma (EBV+DLBCL) is associated with immune dysfunction and tumor microenvironment (TME) heterogeneity. While the prognostic role of the TME in EBV-DLBCL is established, its impact on EBV+DLBCL survival remains unclear. Here, we integrated 10X Visium spatial transcriptomics (ST) with single-cell RNA sequencing (scRNA-seq) to map TME heterogeneity in EBV+DLBCL. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses identified PD-1/PD-L1 signaling as a hallmark of EBV+DLBCL's immunosuppressive TME. Functional validation using the PD-1/PD-L1 inhibitor BMS202 revealed dose-dependent suppression of proliferation and enhanced apoptosis in EBV+Farage cells, with TLR4 emerging as a downstream effector showing EBV-status-dependent regulation. These findings not only link TME-driven PD-1/PD-L1 activation to EBV+DLBCL's poor prognosis but also provide preclinical evidence for PD-1/PD-L1 blockade as a therapeutic strategy.

Topics & Concepts

Diffuse large B-cell lymphomaLymphomaTumor heterogeneitySpatial heterogeneityTumor microenvironmentTranscriptomeBiologyCancer researchComputational biologyTumor cellsImmunologyGeneticsGeneCancerGene expressionEcologyLymphoma Diagnosis and TreatmentCytomegalovirus and herpesvirus researchViral-associated cancers and disorders
Spatial transcriptomics reveals tumor microenvironment heterogeneity in EBV positive diffuse large B cell lymphoma | Litcius