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The Reactome Knowledgebase 2026

Eliot Ragueneau, Chuqiao Gong, Pierre Sinquin, Cristoffer Sevilla, Deidre Beavers, Alexander Grentner, Johannes Griss, Gregory Hogue, Nancy T. Li, Lisa Matthews, Bruce May, M Orlic-Milacic, Helia Mohammadi, Robert Petryszak, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Krishna Kumar Tiwari, Joel Weiser, Adam Wright, Marc Gillespie, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio

2025Nucleic Acids Research26 citationsDOIOpen Access PDF

Abstract

The Reactome Knowledgebase (https://reactome.org) is a freely accessible, expert-curated, open-source, and open-data resource that describes human biology in molecular detail. It spans normal physiology as well as disease mechanisms, including the impact of genetic variation and drug action. Reactome content is continuously expanded and revised, with automated workflows now monitoring retracted publications to maintain data integrity. To meet the needs of a growing user base, Reactome has launched a redesigned Angular-based interface with enhanced accessibility, modular architecture, and a hierarchy of visualization tools: ReacFoam for global pathway overviews, enhanced high-level diagrams for intuitive navigation, and redesigned entity level views (ELVs) enriched with chemical structures, animated protein models, and a new "compare mode" to contrast normal and disease states. New analysis tools support multi-omics integration and customizable visualizations. Recent innovations include the React-to-me chatbot for natural language interaction, community-driven tutorials, and an open Figma icon library. Reactome's sustainability and compliance with FAIR data principles were recently recognized with CoreTrustSeal certification and its designation as a Global Core Biodata and ELIXIR resource, reinforcing its role as a trusted global knowledgebase.

Topics & Concepts

WorkflowVisualizationBiologyComputer scienceModular designData visualizationWorld Wide WebUser interfaceInterface (matter)Data integrationThe InternetResource (disambiguation)Data scienceComputational biologyDocumentationCertificationDebuggingInformation retrievalIdentifierData exchangeGenomicsLinked dataBioinformatics and Genomic NetworksBiomedical Text Mining and OntologiesAdvanced Proteomics Techniques and Applications
The Reactome Knowledgebase 2026 | Litcius