Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution
Bin Li, Wen Zhang, Chuang Guo, Hao Xu, Longfei Li, Minghao Fang, Yinlei Hu, Xinye Zhang, Xinfeng Yao, Meifang Tang, Ke Liu, Xuetong Zhao, Jun Lin, Linzhao Cheng, Falai Chen, Tian Xue, Kun Qu
Topics & Concepts
DeconvolutionBenchmarkingBenchmark (surveying)TranscriptomeComputer sciencePipeline (software)Computational biologyData miningRNA-SeqSpatial analysisData integrationBiologyAlgorithmGene expressionCartographyGeneGeneticsMathematicsStatisticsGeographyBusinessProgramming languageMarketingSingle-cell and spatial transcriptomicsMolecular Biology Techniques and ApplicationsGene expression and cancer classification