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Comparative Genomic Analysis of Rapidly Evolving SARS-CoV-2 Reveals Mosaic Pattern of Phylogeographical Distribution

Roshan Kumar, Helianthous Verma, Nirjara Singhvi, Utkarsh Sood, Vipin Gupta, Mona Singh, Rashmi Kumari, Princy Hira, Shekhar Nagar, Chandni Talwar, Namita Nayyar, Shailly Anand, Charu Dogra Rawat, Mansi Verma, Ram Krishan Negi, Yogendra Singh, Rup Lal

2020mSystems88 citationsDOIOpen Access PDF

Abstract

The COVID-19 pandemic continues to storm the world, with over 6.5 million cases worldwide. The severity of the disease varies with the territories and is mainly influenced by population density and age factor. In this study, we analyzed the transmission pattern of 95 SARS-CoV-2 genomes isolated from 11 different countries. Our study also revealed several nonsynonymous mutations in ORF1b and S-proteins and the impact on their structural stability. Our analysis showed the manipulation of host system by viral proteins through SARS-CoV-2-human protein interactome, which can be useful to understand the impact of virus on human health.

Topics & Concepts

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)MosaicCoronavirus disease 2019 (COVID-19)BiologyEvolutionary biologyVirology2019-20 coronavirus outbreakDistribution (mathematics)PhylogeographySars virusGeographyGeneticsPhylogeneticsMedicineInfectious disease (medical specialty)GeneDiseasePathologyMathematical analysisArchaeologyMathematicsOutbreakSARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections StudiesPlant Virus Research Studies
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