microViz: an R package for microbiome data visualization and statistics
David Barnett, Ilja C.W. Arts, John Penders
Abstract
microViz is an R package for the statistical analysis and visualization of microbiota data. This package extends the functionality of popular microbial ecosystem data analysis R packages, including phyloseq microViz provides a selection of powerful additions to the toolbox of researchers already familiar with phyloseq and microbiome, as well as assisting researchers with less R programming experience to independently explore and analyse their data and to generate publication-ready figures.
Topics & Concepts
VisualizationMicrobiomeR packageData visualizationStatisticsComputer scienceData scienceData miningBiologyMathematicsBioinformaticsGut microbiota and healthMetabolomics and Mass Spectrometry StudiesGene expression and cancer classification