Isothermal self-assembly of multicomponent and evolutive DNA nanostructures
Caroline Rossi‐Gendron, Farah El Fakih, Laura Bourdon, Koyomi Nakazawa, Julie Finkel, Nicolas Triomphe, Léa Chocron, Masayuki Endo, Hiroshi Sugiyama, Gaëtan Bellot, Mathieu Morel, Sergii Rudiuk, Damien Baigl
Abstract
Thermal annealing is usually needed to direct the assembly of multiple complementary DNA strands into desired entities. We show that, with a magnesium-free buffer containing NaCl, complex cocktails of DNA strands and proteins can self-assemble isothermally, at room or physiological temperature, into user-defined nanostructures, such as DNA origamis, single-stranded tile assemblies and nanogrids. In situ, time-resolved observation reveals that this self-assembly is thermodynamically controlled, proceeds through multiple folding pathways and leads to highly reconfigurable nanostructures. It allows a given system to self-select its most stable shape in a large pool of competitive DNA strands. Strikingly, upon the appearance of a new energy minimum, DNA origamis isothermally shift from one initially stable shape to a radically different one, by massive exchange of their constitutive staple strands. This method expands the repertoire of shapes and functions attainable by isothermal self-assembly and creates a basis for adaptive nanomachines and nanostructure discovery by evolution.