MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
Benjamin Churcheward, Maxime Millet, Audrey Bihouée, Guillaume Fertin, Samuel Chaffron
Abstract
knowledge to combine metagenomic information. The comparison against a previous coassembly approach demonstrates a strong impact of this step on genome binning results, but also the benefits of informing coassembly for improving the quality of recovered genomes. MAGNETO integrates complementary assembly-binning strategies to optimize genome reconstruction and provides a complete reads-to-genomes workflow for the growing microbiome research community.
Topics & Concepts
MetagenomicsWorkflowGenomeComputational biologyMagnetoBiologyComputer scienceData scienceEngineeringGeneticsGeneMechanical engineeringDatabaseRotor (electric)Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyGut microbiota and health