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Full reconstruction of simplicial complexes from binary contagion and Ising data

Huan Wang, Chuang Ma, Hanshuang Chen, Ying‐Cheng Lai, Haifeng Zhang

2022Nature Communications95 citationsDOIOpen Access PDF

Abstract

Previous efforts on data-based reconstruction focused on complex networks with pairwise or two-body interactions. There is a growing interest in networks with higher-order or many-body interactions, raising the need to reconstruct such networks based on observational data. We develop a general framework combining statistical inference and expectation maximization to fully reconstruct 2-simplicial complexes with two- and three-body interactions based on binary time-series data from two types of discrete-state dynamics. We further articulate a two-step scheme to improve the reconstruction accuracy while significantly reducing the computational load. Through synthetic and real-world 2-simplicial complexes, we validate the framework by showing that all the connections can be faithfully identified and the full topology of the 2-simplicial complexes can be inferred. The effects of noisy data or stochastic disturbance are studied, demonstrating the robustness of the proposed framework.

Topics & Concepts

Simplicial complexComputer scienceMaximizationRobustness (evolution)InferenceIsing modelBinary numberPairwise comparisonSimplicial homologyAbstract simplicial complexTheoretical computer scienceSynthetic dataAlgorithmMathematicsArtificial intelligenceMathematical optimizationStatistical physicsCombinatoricsBiologyArithmeticBiochemistryPhysicsGeneFunctional Brain Connectivity StudiesComplex Network Analysis TechniquesBioinformatics and Genomic Networks
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