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Resonance Raman Studies on Heme Ligand Stretching Modes in Methionine80-Depleted Cytochrome <i>c</i>: Fe–His, Fe–O<sub>2</sub>, and O–O Stretching Modes

Mohan Zhang, Hulin Tai, Sachiko Yanagisawa, Masaru Yamanaka, Takashi Ogura, Shun Hirota

2023The Journal of Physical Chemistry B15 citationsDOIOpen Access PDF

Abstract

High Resolution Image Download MS PowerPoint Slide The peroxidase activity of cytochrome (cyt) c increases when Met80 dissociates from the heme iron, which is related to the initial cyt c membrane permeation step of apoptosis. Met80-dissociated cyt c can form an oxygenated species. Herein, resonance Raman spectra of Met80-depleted horse cyt c (M80A cyt c ) were analyzed to elucidate the heme ligand properties of Met80-dissociated cyt c . The Fe–His stretching (ν Fe–His ) mode of ferrous M80A cyt c was observed at 236 cm –1, and this frequency decreased by 1.5 cm –1 for the 15 N-labeled protein. The higher ν Fe–His frequency of M80A cyt c than of other His-ligated heme proteins indicates strong heme coordination and the imidazolate character of His18. Peaks attributed to the Fe–O 2 stretching (ν Fe–O 2 ) and O–O stretching (ν O–O ) modes of the oxygenated species of M80A cyt c were observed at 576 and 1148 cm –1, respectively, under an 16 O 2 atmosphere, whereas the frequencies decreased to 544 and 1077 cm –1, respectively, under an 18 O 2 atmosphere. The ν Fe–O 2 mode of Hydrogenobacter thermophilus (HT) M59A cyt c 552 was observed at 580 cm –1 under an 16 O 2 atmosphere, whereas the frequency decreased to 553 cm –1 under an 18 O 2 atmosphere, indicating that relatively high ν Fe–O 2 frequencies are characteristic of c -type cyt proteins. By comparison of the simultaneously observed ν Fe–O 2 and ν O–O frequencies of oxygenated cyt c and other oxygenated His-ligated heme proteins, the frequencies tend to have a positive linear relationship; the ν Fe–O 2 frequency increases when the ν O–O frequency increases. The imidazolate character of the heme-coordinated His and strong Fe–O and O–O bonds are characteristic of cyt c and apparently related to the peroxidase activity when Met80 dissociates from the heme iron.

Topics & Concepts

ChemistryHemeHemeproteinCytochrome cCytochromeLigand (biochemistry)Resonance (particle physics)PeroxidaseRaman spectroscopyFerrousStereochemistryCrystallographyAnalytical Chemistry (journal)BiochemistryApoptosisEnzymeReceptorOrganic chemistryOpticsPhysicsParticle physicsHemoglobin structure and functionPhotosynthetic Processes and MechanismsPhotoreceptor and optogenetics research