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A panel of platelet-associated circulating long non-coding RNAs as potential biomarkers for colorectal cancer

Bingqi Ye, Fengying Li, Mengsha Chen, Yu Weng, Chao Qi, Yulin Xie, Qikun Zhang, Huisi Ding, Jun Zhang, Xiangwei Gao

2021Genomics34 citationsDOIOpen Access PDF

Abstract

Evidence has suggested the potential of tumor-educated platelets as a biomarker trove for cancer diagnostics, but the difficulty in isolation limits its application. Since most of the circulating RNAs are derived from platelets, the change of RNA profile in platelets may lead to altered RNA expression in serum. Here, we identified a panel of platelet-associated long non-coding RNAs (lncRNAs) and evaluated its diagnostic capacity in serum of colorectal cancer (CRC) patients. Four lncRNAs, LNCAROD, SNHG20, LINC00534, and TSPOAP-AS1, were upregulated in both platelets and serum of CRC patients. A binary logistic model derived from them has validated area under roc curve of 0.78 indicating great performance. Furthermore, the expression levels of LNCAROD and TSPOAP-AS1 were correlated with cancer staging and tumor location. Together, our results add novel lncRNA biomarkers to the list of blood tests for CRC diagnostics and provide molecular evidence for the cross-talk between CRC platelets and serum.

Topics & Concepts

Colorectal cancerBiologyPlateletBiomarkerCancerRNAmicroRNAReceiver operating characteristicFold changeCancer researchOncologyInternal medicineBioinformaticsImmunologyGene expressionGeneGeneticsMedicineCancer-related molecular mechanisms researchInflammatory Biomarkers in Disease PrognosisCancer Genomics and Diagnostics