Litcius/Paper detail

Text‐based representations with interpretable machine learning reveal structure–property relationships of polybenzenoid hydrocarbons

Shachar Fite, Alexandra Wahab, Eno Paenurk, Zeev Gross, Renana Gershoni‐Poranne

2022Journal of Physical Organic Chemistry20 citationsDOI

Abstract

Abstract New tools are developed and applied to enable the use of interpretable machine learning for investigation of structure–property relationships in polybenzenoid hydrocarbons (PBHs). A textual molecular representation, which is based on the annulation sequence of PBHs, is shown to be of utility either in its textual form or as a basis for a curated feature vector. Both forms display interpretability exceeding those achievable by standard SMILES representation; and the former also has increased predictive accuracy. A recently developed model, CUSTODI, was applied for the first time as an interpretable model, identifying important structural features that impact various electronic molecular properties. The resulting insights not only validate several well‐known “rules of thumb” of organic chemistry but also reveal new behaviors and influential structural motifs, thus providing guiding principles for rational design and fine‐tuning of PBHs.

Topics & Concepts

InterpretabilityRepresentation (politics)Property (philosophy)Artificial intelligenceFeature (linguistics)Rule of thumbChemistryBasis (linear algebra)Quantitative structure–activity relationshipSequence (biology)Machine learningComputer scienceNatural language processingBiological systemAlgorithmMathematicsGeometryBiochemistryLinguisticsPolitical scienceEpistemologyPhilosophyPoliticsBiologyLawComputational Drug Discovery MethodsMachine Learning in Materials ScienceCrystallography and molecular interactions
Text‐based representations with interpretable machine learning reveal structure–property relationships of polybenzenoid hydrocarbons | Litcius