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Single-cell genomics for resolution of conserved bacterial genes and mobile genetic elements of the human intestinal microbiota using flow cytometry

Dylan Lawrence, Danielle E. Campbell, Lawrence A. Schriefer, Rachel Rodgers, Forrest C. Walker, Marissa Turkin, Lindsay Droit, Miles Parkes, Scott A. Handley, Megan T. Baldridge

2022Gut Microbes19 citationsDOIOpen Access PDF

Abstract

. Thus, we demonstrate an approach for flow cytometric separation and sequencing of single bacterial cells from the human microbiota, which yields a variety of critical insights into both the functional potential of individual microbes and the variation among those microbes. This method definitively links a variety of conserved and mobile genomic features, and can be extended to further resolve diverse elements present in the human microbiota.

Topics & Concepts

BiologyMetagenomicsGenomeBacterial genome sizeGeneticsProphageGeneComputational biologyMobile genetic elementsGenomics16S ribosomal RNABacterial artificial chromosomeMicrobiomeEscherichia coliBacteriophageGut microbiota and healthMycobacterium research and diagnosisMicrobial Community Ecology and Physiology
Single-cell genomics for resolution of conserved bacterial genes and mobile genetic elements of the human intestinal microbiota using flow cytometry | Litcius