m6A RNA methylation regulates the transcription factors JUN and JUNB in TGF-β-induced epithelial–mesenchymal transition of lung cancer cells
Kusuma Suphakhong, Minoru Terashima, Sasithorn Wanna-udom, Risa Takatsuka, Akihiko Ishimura, Takahisa Takino, Takeshi Suzuki
Abstract
N6-methyladenosine (m6A) is the most common internal chemical modification of mRNAs involved in many pathological processes including various cancers. In this study, we investigated the m6A-dependent regulation of JUN and JUNB transcription factors (TFs) during transforming growth factor-beta–induced epithelial–mesenchymal transition (EMT) of A549 and LC2/ad lung cancer cell lines, as the function and regulation of these TFs within this process remains to be clarified. We found that JUN and JUNB played an important and nonredundant role in the EMT-inducing gene expression program by regulating different mesenchymal genes and that their expressions were controlled by methyltransferase-like 3 (METTL3) m6A methyltransferase. METTL3–mediated regulation of JUN expression is associated with the translation process of JUN protein but not with the stability of JUN protein or mRNA, which is in contrast with the result of m6A-mediated regulation of JUNB mRNA stability. We identified the specific m6A motifs responsible for the regulation of JUN and JUNB in EMT within 3′UTR of JUN and JUNB. Furthermore, we discovered that different m6A reader proteins interacted with JUN and JUNB mRNA and controlled m6A-dependent expression of JUN protein and JUNB mRNA. These results demonstrate that the different modes of m6A-mediated regulation of JUN and JUNB TFs provide critical input in the gene regulatory network during transforming growth factor-beta–induced EMT of lung cancer cells. N6-methyladenosine (m6A) is the most common internal chemical modification of mRNAs involved in many pathological processes including various cancers. In this study, we investigated the m6A-dependent regulation of JUN and JUNB transcription factors (TFs) during transforming growth factor-beta–induced epithelial–mesenchymal transition (EMT) of A549 and LC2/ad lung cancer cell lines, as the function and regulation of these TFs within this process remains to be clarified. We found that JUN and JUNB played an important and nonredundant role in the EMT-inducing gene expression program by regulating different mesenchymal genes and that their expressions were controlled by methyltransferase-like 3 (METTL3) m6A methyltransferase. METTL3–mediated regulation of JUN expression is associated with the translation process of JUN protein but not with the stability of JUN protein or mRNA, which is in contrast with the result of m6A-mediated regulation of JUNB mRNA stability. We identified the specific m6A motifs responsible for the regulation of JUN and JUNB in EMT within 3′UTR of JUN and JUNB. Furthermore, we discovered that different m6A reader proteins interacted with JUN and JUNB mRNA and controlled m6A-dependent expression of JUN protein and JUNB mRNA. These results demonstrate that the different modes of m6A-mediated regulation of JUN and JUNB TFs provide critical input in the gene regulatory network during transforming growth factor-beta–induced EMT of lung cancer cells. Epithelial–mesenchymal transition (EMT) is one of the crucial mechanisms causing cancer malignancies, such as invasion, metastasis, and resistance to therapy (1Dongre A. Weinberg R.A. New insights into the mechanisms of epithelial-mesenchymal transition and implications for cancer.Nat. Rev. Mol. Cell Biol. 2019; 20: 69-84Crossref PubMed Scopus (1419) Google Scholar, 2Pastushenko I. Blanpain C. EMT transition states during tumor progression and metastasis.Trends Cell Biol. 2019; 29: 212-226Abstract Full Text Full Text PDF PubMed Scopus (988) Google Scholar). During EMT, tumor cells lose epithelial characters such as cell polarity and cell contacts and acquire invasive stem cell–like properties that expand their ability for local invasion and metastasis. A major inducer of EMT is transforming growth factor-beta (TGF-β) along with the cytokines and growth factors secreted by the tumor microenvironment. EMT is characterized by the dynamic and reversible changes in epithelial and mesenchymal gene expression (3Lamouille S. Xu J. Derynck R. Molecular mechanisms of epithelial-mesenchymal transition.Nat. Rev. Mol. Cell Biol. 2014; 15: 178-196Crossref PubMed Scopus (5130) Google Scholar). Epithelial cell markers such as E-cadherin and claudins are downregulated, whereas mesenchymal markers including vimentin, fibronectin, and N-cadherin are upregulated during EMT. Many transcription factors (TFs) are involved in the transcriptional regulation of EMT-related genes. Especially, TFs such as ZEB family, SNAIL family, and TWIST can activate EMT through the transcriptional repression of E-cadherin. Recently, nonredundant functions of EMT-related TFs have been emphasized (4Stemmler M.P. Eccles R.L. Brabletz S. Brabletz T. Non-redundant functions of EMT transcription factors.Nat. Cell Biol. 2019; 21: 102-112Crossref PubMed Scopus (244) Google Scholar). Because of the differential expression patterns in different tumor types, EMT-related TFs would have different functions and different target genes in a context-dependent manner. Therefore, careful analyses and discussions are important to understand their roles in various cancers. In addition, epigenetic regulations are considered as one of the critical mechanisms for EMT owing to its phenotypic plasticity (5Tam W.L. Weinberg R.A. The epigenetics of epithelial-mesenchymal plasticity in cancer.Nat. Med. 2013; 19: 1438-1449Crossref PubMed Scopus (875) Google Scholar, 6Serrano-Gomez S.J. Maziveyi of epithelial-mesenchymal transition through epigenetic and 15: PubMed Google Scholar). we have investigated and found the roles of and in the transcriptional regulatory network during EMT S. A. T. epithelial-mesenchymal transition of cancer cells by 2014; PubMed Scopus Google Scholar, S. A. T. to the epigenetic regulation of epithelial-mesenchymal transition in lung cancer cell Biol. Full Text Full Text PDF PubMed Scopus Google Scholar, A. S. T. to epigenetic progression of the epithelial-mesenchymal transition of lung and cancer Biol. Full Text Full Text PDF PubMed Scopus Google Scholar, S. A. T. T. is involved in the epigenetic regulation of epithelial-mesenchymal transition in lung and cancer cell Biol. Full Text Full Text PDF PubMed Scopus Google Scholar). N6-methyladenosine (m6A) is the most internal chemical modification of mRNAs and in and is in mRNA and translation S. and mRNA Rev. Mol. Cell Biol. 2019; 20: PubMed Scopus Google Scholar). modification is controlled by a of proteins identified as and 3 and the m6A to m6A the and function as to the of m6A which a dynamic of this modification J. C. and context-dependent functions of and 2019; Full Text Full Text PDF PubMed Scopus Google Scholar). the family, family, and to the modification is that m6A modification an important role in including and C. A mechanisms to J. Scopus Google Scholar). have that m6A regulation is involved in the and progression of various of cancer J. S. T. The critical role of in 2019; PubMed Scopus Google Scholar, J. modification in and roles and implications in Full Text Full Text PDF PubMed Scopus Google Scholar). been that JUN of and are by various and are involved in and in cell and 20: PubMed Scopus Google Scholar). In with to EMT that of JUN E-cadherin expression and N-cadherin in cells S. of cell invasion, and EMT in cell PubMed Scopus Google and expression in cancer cells cancer cell by PubMed Scopus Google Scholar). During transforming growth factor-beta EMT in epithelial cell JUNB the of factors such as and which are for and A. S. to repression and the epithelial-mesenchymal transition in to transforming growth Cell Biol. PubMed Scopus Google Scholar). to be involved in EMT of and cell through the of S. A. S. of and transition by with PubMed Scopus Google Scholar). These that the of JUN in EMT and the target genes be different in various cancer we have that JUNB is one of the important TFs by m6A during EMT of A549 and LC2/ad lung cancer cell S. A. T. m6A to epithelial-mesenchymal transition of lung cancer cells through the regulation of PubMed Scopus Google Scholar). the stability of JUNB mRNA through m6A the function of JUN and its regulation by m6A modification during EMT in lung cancer cells are In this study, we to the function and regulatory of JUN TFs in the expression of epithelial and mesenchymal genes during EMT of lung cancer that JUN and JUNB but not to the EMT-inducing gene expression program by regulating different mesenchymal genes. 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S. of and transition by with PubMed Scopus Google Scholar). the target genes controlled by JUN and the modes of regulation are the mechanisms during EMT are to be In this study, we found that of JUN and JUNB the expression of epithelial and mesenchymal genes during EMT of A549 and LC2/ad lung cancer cells and the EMT-related genes as as we the of the expression of JUN and JUNB by and that JUN and JUNB TFs controlled the expression of different mesenchymal and and is with the gene regulatory of JUN and JUNB by the S. of cell invasion, and EMT in cell PubMed Scopus Google Scholar, A. S. to repression and the epithelial-mesenchymal transition in to transforming growth Cell Biol. PubMed Scopus Google Scholar). results that common and functions of JUN and JUNB TFs were important in the transcriptional regulation during EMT of lung cancer cells. is with the that EMT-related TFs have and functions in EMT which can be specific to the cancer (4Stemmler M.P. Eccles R.L. Brabletz S. Brabletz T. 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