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Pusillimonas maritima sp. nov., isolated from surface seawater

Jian‐Yang Li, Mingming Qi, Qiliang Lai, Chunming Dong, Xiupian Liu, Guangyi Wang, Zongze Shao

2020INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY12 citationsDOI

Abstract

Two Gram-stain-negative, short rod-shaped and non-flagellated strains, designated 17-4A T and L52-1-41, were isolated from the surface seawater of the Indian Ocean and South China Sea, respectively. The 16S rRNA genes of the two strains shared sequence similarity of 99.45 %. Strain 17-4A T shared the highest 16S rRNA gene similarity of 98.02 % with Pusillimonas caeni EBR-8-1 T , followed by Pusillimonas noertemannii BN9 T (97.47 %), Pusillimonas soli MJ07 T (96.93 %), Parapusillimonas granuli Ch07 T (96.68 %), Pusillimonas ginsengisoli DCY25 T (96.65 %), Eoetvoesia caeni PB3-7B T (96.63 %), Paracandidimonas caeni 24 T (96.34 %), Castellaniella defragrans 54Pin T (96.28 %) and Pusillimonas harenae B201 T (96.05 %). L52-1-41 shared the highest 16S rRNA gene similarity of 97.74 % with Pusillimonas caeni EBR-8-1 T , followed by Pusillimonas noertemannii BN9 T (97.47 %), Pusillimonas soli MJ07 T (96.65 %), Parapusillimonas granuli Ch07 T (96.41 %), Pusillimonas ginsengisoli DCY25 T (96.37 %), Eoetvoesia caeni PB3-7B T (96.35 %), Pusillimonas harenae B201 T (96.28 %), and Paracandidimonas caeni 24 T (96.06 %). The results of phylogenetic analyses indicated that 17-4A T and L52-1-41 formed a stable, distinct and highly supported lineage affiliated to the genus Pusillimonas . The results of the digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses indicated that they represented a single species. They featured similar genomic DNA G+C contents of 53.2–53.4 mol%. Activities of catalase and oxidase were negative for both strains. The fatty acids patterns of 17-4A T and L52-1-41 were most similar, mostly comprised of C 16 : 0 , C 17 : 0 cyclo, C 18 : 0 , C 18 : 1 ω9 c and summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c ). The major polar lipids of the two strains were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and unidentified aminolipids. The respiratory quinone of the two strains was Q-8. Hence, on the basis of the phenotypic, chemotaxonomic and genotypic data presented in this study, we proposed the classification of both strains as representatives of a novel species named Pusillimonas maritima sp. nov., with the type strain 17-4A T (=MCCC 1A12670 T =KCTC 62121 T =NBRC 113794 T ), and another strain L52-1-41 (=MCCC 1A05046=KCTC 52313).

Topics & Concepts

16S ribosomal RNABiologyPhylogenetic treeSeawatergenomic DNAGenusMolecular biologyGeneMicrobiologyBotanyGeneticsEcologyGenomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyEnvironmental DNA in Biodiversity Studies
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