Characterization of Methyl- and Acetyl-Ni Intermediates in Acetyl CoA Synthase Formed during Anaerobic CO<sub>2</sub> and CO Fixation
Mehmet Can, Macon J. Abernathy, Seth Wiley, Claire Griffith, Christopher D. James, Jin Xiong, Yisong Guo, Brian M. Hoffman, Stephen W. Ragsdale, Ritimukta Sarangi
Abstract
The Wood–Ljungdahl Pathway is a unique biological mechanism of carbon dioxide and carbon monoxide fixation proposed to operate through nickel-based organometallic intermediates. The most unusual steps in this metabolic cycle involve a complex of two distinct nickel–iron–sulfur proteins: CO dehydrogenase and acetyl-CoA synthase (CODH/ACS). Here, we describe the nickel-methyl and nickel-acetyl intermediates in ACS completing the characterization of all its proposed organometallic intermediates. A single nickel site (Ni p ) within the A cluster of ACS undergoes major geometric and redox changes as it transits the planar Ni p, tetrahedral Ni p –CO and planar Ni p –Me and Ni p –Ac intermediates. We propose that the Ni p intermediates equilibrate among different redox states, driven by an electrochemical–chemical (EC) coupling process, and that geometric changes in the A-cluster linked to large protein conformational changes control entry of CO and the methyl group.