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Pressure control using stochastic cell rescaling

Mattia Bernetti, Giovanni Bussi

2020The Journal of Chemical Physics869 citationsDOIOpen Access PDF

Abstract

Molecular dynamics simulations require barostats to be performed at a constant pressure. The usual recipe is to employ the Berendsen barostat first, which displays a first-order volume relaxation efficient in equilibration but results in incorrect volume fluctuations, followed by a second-order or a Monte Carlo barostat for production runs. In this paper, we introduce stochastic cell rescaling, a first-order barostat that samples the correct volume fluctuations by including a suitable noise term. The algorithm is shown to report volume fluctuations compatible with the isobaric ensemble and its anisotropic variant is tested on a membrane simulation. Stochastic cell rescaling can be straightforwardly implemented in the existing codes and can be used effectively in both equilibration and production phases.

Topics & Concepts

Statistical physicsNoise (video)Volume (thermodynamics)Monte Carlo methodAnisotropyStochastic processMathematicsBiological systemCriticalityRobustness (evolution)Relaxation (psychology)PhysicsIsobaric processStochastic modellingAlgorithmComputer scienceConsistency (knowledge bases)LimitingControl theory (sociology)Constant (computer programming)Applied mathematicsProduction (economics)Noise measurementEstimatorCore (optical fiber)Observational errorWhite noiseMeasurement uncertaintyDynamics (music)Stochastic resonanceGene Regulatory Network AnalysisNanopore and Nanochannel Transport StudiesBlock Copolymer Self-Assembly