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Fragment Screening Yields a Small‐Molecule Stabilizer of 14‐3‐3 Dimers That Modulates Client Protein Interactions

Hendrik J. Brink, Rick Riemens, Stephanie Thee, Berend Beishuizen, Daniel Da Costa Pereira, Maikel Wijtmans, Iwan J. P. de Esch, Martine J. Smit, Albertus H. de Boer

2022ChemBioChem14 citationsDOIOpen Access PDF

Abstract

The development of protein-protein interaction (PPI) inhibitors has been a successful strategy in drug development. However, the identification of PPI stabilizers has proven much more challenging. Here we report a fragment-based drug screening approach using the regulatory hub-protein 14-3-3 as a platform for identifying PPI stabilizers. A homogenous time-resolved FRET assay was used to monitor stabilization of 14-3-3/peptide binding using the known interaction partner estrogen receptor alpha. Screening of an in-house fragment library identified fragment 2 (VUF15640) as a putative PPI stabilizer capable of cooperatively stabilizing 14-3-3 PPIs in a cooperative fashion with Fusicoccin-A. Mechanistically, fragment 2 appears to enhance 14-3-3 dimerization leading to increased client-protein binding. Functionally, fragment 2 enhanced potency of 14-3-3 in a cell-free system inhibiting the enzyme activity of the nitrate reductase. In conclusion, we identified a general PPI stabilizer targeting 14-3-3, which could be used as a tool compound for investigating 14-3-3 client protein interactions.

Topics & Concepts

Small moleculeStabilizer (aeronautics)Fragment (logic)ChemistryProtein–protein interactionFusicoccinTarget proteinPeptideDrug discoveryCombinatorial chemistryComputational biologyBiochemistryEnzymeBiologyGeneComputer scienceProgramming languageEngineeringMechanical engineeringATPase14-3-3 protein interactionsMicrobial Natural Products and BiosynthesisUbiquitin and proteasome pathways
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