An Automated Deep Learning Approach for Spine Segmentation and Vertebrae Recognition Using Computed Tomography Images
Muhammad Usman Saeed, Νικόλαος Δικαίος, Aqsa Dastgir, Ghulam Ali, Muhammad Hamid, Fahima Hajjej
Abstract
Spine image analysis is based on the accurate segmentation and vertebrae recognition of the spine. Several deep learning models have been proposed for spine segmentation and vertebrae recognition, but they are very computationally demanding. In this research, a novel deep learning model is introduced for spine segmentation and vertebrae recognition using CT images. The proposed model works in two steps: (1) A cascaded hierarchical atrous spatial pyramid pooling residual attention U-Net (CHASPPRAU-Net), which is a modified version of U-Net, is used for the segmentation of the spine. Cascaded spatial pyramid pooling layers, along with residual blocks, are used for feature extraction, while the attention module is used for focusing on regions of interest. (2) A 3D mobile residual U-Net (MRU-Net) is used for vertebrae recognition. MobileNetv2 includes residual and attention modules to accurately extract features from the axial, sagittal, and coronal views of 3D spine images. The features from these three views are concatenated to form a 3D feature map. After that, a 3D deep learning model is used for vertebrae recognition. The VerSe 20 and VerSe 19 datasets were used to validate the proposed model. The model achieved more accurate results in spine segmentation and vertebrae recognition than the state-of-the-art methods.