Persisting uropathogenic Escherichia coli lineages show signatures of niche-specific within-host adaptation mediated by mobile genetic elements

Robert Thänert, JooHee Choi, Kimberly A. Reske, Tiffany Hink, Anna Thänert, Meghan A. Wallace, Bin Wang, Sondra Seiler, Candice Cass, Margaret H. Bost, Emily Struttmann, Zainab Hassan Iqbal, Steven R. Sax, Victoria J. Fraser, Arthur W. Baker, Katherine Foy, Brett Williams, Ben Xu, Pam Capocci-Tolomeo, Ebbing Lautenbach, Carey‐Ann D. Burnham, Erik R. Dubberke, Jennie H. Kwon, Gautam Dantas