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Ratiometric fluorescence platform for the ultrasensitive detection of kanamycin based on split aptamer co-recognition triggers Mg2+-DNAzyme-driven DNA walker systems

Lu Xia, Long Wang, Guowei Li, Yuxin Wang, Hao Guo, Yi Ding, Mengjia Liu, Shangchen Fu, Liqing Xu, Na Ge, Wupeng Ge

2024The Science of The Total Environment14 citationsDOIOpen Access PDF

Abstract

In this work, a novel 3D-DNA walker signal amplification strategy was designed to construct a fluorescent aptasensor for the detection of kanamycin (KAN). The aptasensor utilizes split aptamers for the synergistic recognition of KAN. The presence of KAN induces the split aptamers recombination to form the Mg 2+ -DNAzyme structure, which is activated by Mg 2+ to drive the 3D-DNA walker process for cascading signal amplification. Employing gold nanoflowers (AuNFs) as walking substrate material increases the local DNA concentration to enhance the walker efficiency. The prepared fluorescent aptasensor achieved efficient and sensitive detection of KAN with satisfactory results in the concentration range of 1 × 10 −8 - 1 × 10 −3 μg/kg and the detection limit of 5.63 fg/kg. Meanwhile, the designed fluorescent aptasensor exhibited favorable specificity, anti-interference, storage stability and reproducibility, and verified the feasibility of its application in milk samples. The present work provides an effective tool for the regulation of KAN contamination in animal-derived foods with promising prospects.

Topics & Concepts

AptamerDeoxyribozymeDetection limitKanamycinFluorescenceDNAChemistryLinear rangeDrug detectionNanotechnologyG-quadruplexCombinatorial chemistryBiological systemMolecular biologyChromatographyMaterials scienceBiologyBiochemistryPhysicsGeneQuantum mechanicsAdvanced biosensing and bioanalysis techniquesBiosensors and Analytical DetectionRNA Interference and Gene Delivery
Ratiometric fluorescence platform for the ultrasensitive detection of kanamycin based on split aptamer co-recognition triggers Mg2+-DNAzyme-driven DNA walker systems | Litcius