Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, Russell Corbett‐Detig
Topics & Concepts
BiologyGenomePhylogeneticsPhylogenetic treeContact tracingComputational biologyPandemicEvolutionary biologyTracingVisualizationGenomicsTransmission (telecommunications)Tree (set theory)Coronavirus disease 2019 (COVID-19)GeneticsComputer scienceData miningInfectious disease (medical specialty)GeneMathematicsMathematical analysisTelecommunicationsPathologyMedicineOperating systemDiseaseGenomics and Phylogenetic StudiesVirology and Viral DiseasesBacteriophages and microbial interactions