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NMRtist: an online platform for automated biomolecular NMR spectra analysis

Piotr Klukowski, Roland Riek, Peter Güntert

2023Bioinformatics35 citationsDOIOpen Access PDF

Abstract

SUMMARY: We present NMRtist, an online platform that combines deep learning, large-scale optimization and cloud computing to automate protein NMR spectra analysis. Our website provides virtual storage for NMR spectra deposition together with a set of applications designed for automated peak picking, chemical shift assignment and protein structure determination. The system can be used by non-experts and allows protein assignments and structures to be determined within hours after the measurements, strictly without any human intervention. AVAILABILITY AND IMPLEMENTATION: NMRtist is freely available to non-commercial users at https://nmrtist.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Topics & Concepts

Computer scienceCloud computingSet (abstract data type)NMR spectra databaseSoftwareComputational scienceSpectral lineData miningOperating systemProgramming languagePhysicsAstronomyProtein Structure and DynamicsMetabolomics and Mass Spectrometry StudiesCell Image Analysis Techniques