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Beta turn propensity and a model polymer scaling exponent identify intrinsically disordered phase-separating proteins

Elisia A. Paiz, Jeffre Allen, John J. Correia, Nicholas C. Fitzkee, Loren E. Hough, Steven T. Whitten

2021Journal of Biological Chemistry49 citationsDOIOpen Access PDF

Abstract

valence electron interactions. By this mechanism, β-turns could act as energetically favored nucleation points, which may explain the increased propensity for turns in ID regions (IDRs) utilized biologically for phase separation. Phase-separating IDRs, non-phase-separating IDRs, and folded regions could be distinguished by combining v and β-turn propensity. Finally, we propose a new algorithm, ParSe (partition sequence), for predicting phase-separating protein regions, and which is able to accurately identify folded, disordered, and phase-separating protein regions based on the primary sequence.

Topics & Concepts

ExponentIntrinsically disordered proteinsScalingPhase (matter)ChemistrySequence (biology)Chemical physicsNucleationPhysicsCrystallographyThermodynamicsMathematicsBiochemistryOrganic chemistryGeometryLinguisticsPhilosophyRNA Research and SplicingProtein Structure and DynamicsRNA modifications and cancer
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