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Short X···N Halogen Bonds With Hexamethylenetetraamine as the Acceptor

Goulielmina Anyfanti, Antonio Bauzá, Lorenzo Gentiluomo, João Rodrigues, Gustavo Portalone, Antonio Frontera, Kari Rissanen, Rakesh Puttreddy

2021Frontiers in Chemistry19 citationsDOIOpen Access PDF

Abstract

Hexamethylenetetramine (HMTA) and N -haloimides form two types of short (imide)X···N and X–X···N (X = Br, I) halogen bonds. Nucleophilic substitution or ligand-exchange reaction on the peripheral X of X–X···N with the chloride of N -chlorosuccinimide lead to Cl–X···N halogen-bonded complexes. The 1:1 complexation of HMTA and ICl manifests the shortest I···N halogen bond [2.272(5) Å] yet reported for an HMTA acceptor. Two halogen-bonded organic frameworks are prepared using 1:4 molar ratio of HMTA and N -bromosuccinimide, each with a distinct channel shape, one possessing oval and the other square grid. The variations in channel shapes are due to tridentate and tetradentate (imide)Br···N coordination modes of HMTA. Density Functional Theory (DFT) studies are performed to gain insights into (imide)X···N interaction strengths (ΔE int ). The calculated ΔE int values for (imide)Br···N (−11.2 to −12.5 kcal/mol) are smaller than the values for (imide)I···N (−8.4 to −29.0 kcal/mol). The DFT additivity analysis of (imide)Br···N motifs demonstrates Br···N interaction strength gradually decreasing from 1:1 to 1:3 HMTA: N -bromosuccinimide complexes. Exceptionally similar charge density values ρ(r) for N–I covalent bond and I···N non-covalent bond of a (saccharin)N–I···N motif signify the covalent character for I···N halogen bonding.

Topics & Concepts

ChemistryImideHalogenHalogen bondCovalent bondHexamethylenetetramineNatural bond orbitalAcceptorDensity functional theoryLigand (biochemistry)CrystallographyMedicinal chemistryStereochemistryPolymer chemistryComputational chemistryOrganic chemistryAlkylBiochemistryReceptorCondensed matter physicsPhysicsCrystallography and molecular interactionsMetal-Organic Frameworks: Synthesis and ApplicationsCrystal structures of chemical compounds