HAT: Hypergraph analysis toolbox
Joshua Pickard, Can Chen, Rahmy Salman, Cooper Stansbury, Sion Kim, Amit Surana, Anthony M. Bloch, Indika Rajapakse
Abstract
Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.
Topics & Concepts
ToolboxHypergraphComputer scienceVisualizationTheoretical computer scienceSoftwareData miningMathematicsProgramming languageDiscrete mathematicsBioinformatics and Genomic NetworksGene Regulatory Network AnalysisComplex Network Analysis Techniques