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Chromatin-based memory as a self-stabilizing influence on cell identity

Charles C. Bell, Geoffrey J. Faulkner, Omer Gilan

2024Genome biology15 citationsDOIOpen Access PDF

Abstract

Cell types are traditionally thought to be specified and stabilized by gene regulatory networks. Here, we explore how chromatin memory contributes to the specification and stabilization of cell states. Through pervasive, local, feedback loops, chromatin memory enables cell states that were initially unstable to become stable. Deeper appreciation of this self-stabilizing role for chromatin broadens our perspective of Waddington's epigenetic landscape from a static surface with islands of stability shaped by evolution, to a plasticine surface molded by experience. With implications for the evolution of cell types, stabilization of resistant states in cancer, and the widespread plasticity of complex life.

Topics & Concepts

ChromatinBiologyEpigeneticsEpigenesisBivalent chromatinEvolutionary biologyGeneticsGeneChromatin remodelingDNA methylationGene expressionGenomics and Chromatin DynamicsEpigenetics and DNA MethylationGene Regulatory Network Analysis