Accelerating DNA pairwise sequence alignment using FPGA and a customized convolutional neural network
Amr E. Eldin Rashed, Marwa Obaya, Hossam El-Din Moustafa
Topics & Concepts
Computer scienceLookup tableField-programmable gate arrayConvolutional neural networkPairwise comparisonSoftwareComputer hardwareParallel computingSequence (biology)Smith–Waterman algorithmAlgorithmEncoding (memory)Computer architectureComputer engineeringSequence alignmentArtificial intelligenceBiologyChemistryBiochemistryGenePeptide sequenceGeneticsProgramming languageGenomics and Phylogenetic StudiesMachine Learning in BioinformaticsEvolutionary Algorithms and Applications