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TSNAdb v2.0: The Updated Version of Tumor-Specific Neoantigen Database

Jingcheng Wu, Wenfan Chen, Yuxuan Zhou, Ying Chi, Xian‐Sheng Hua, Jian Wu, Xun Gu, Shuqing Chen, Zhan Zhou

2022Genomics Proteomics & Bioinformatics29 citationsDOIOpen Access PDF

Abstract

In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantigen database (TSNAdb) previously, which has attracted much attention. In this study, we provide TSNAdb v2.0, an updated version of the TSNAdb. TSNAdb v2.0 offers several new features, including (1) adopting more stringent criteria for neoantigen identification, (2) providing predicted neoantigens derived from three types of somatic mutations, and (3) collecting experimentally validated neoantigens and dividing them according to the experimental level. TSNAdb v2.0 is freely available at https://pgx.zju.edu.cn/tsnadb/.

Topics & Concepts

ImmunotherapyIdentification (biology)Computational biologyDatabaseSomatic cellComputer scienceBiologyCancerGeneticsGeneBotanyvaccines and immunoinformatics approachesImmunotherapy and Immune ResponsesMonoclonal and Polyclonal Antibodies Research