A Dynamic Control Center Based on a DNA Reaction Network for Programmable Building of DNA Nanostructures
Fengming Chen, Dan Wang, Lei He, Yihao Liu, Yulin Du, Zhenzhen Guo, Shuoyao He, Zhimin Wang, Jing Zhang, Yifan Lyu, Weihong Tan
Abstract
DNA-based nanostructures allow for complex self-assembly with nanometer precision through the specificity of Watson-Crick base pairing, but network behavior-directed control of the kinetic process is less studied. Here we show how the DNA reaction network (DRN), which has emerged as a reliable and programmable way to implement artificial network dynamics, can be built as the control center of programmable nanostructures, allowing spatiotemporal control over the dynamic behavior of DNA nanotubes. We chose a common network motif in biological control systems, the feed-forward loop, as the model network and demonstrated that dynamic behaviors, such as self-tuning control and multilayer hierarchical assembly, could be programmed by constructing an inhibition network and an excitation network, separately, in buffer solution and inside protocells.