A guide for comparing microbial co‐occurrence networks
Chi Liu, Chaonan Li, Yanqiong Jiang, Raymond Jianxiong Zeng, Minjie Yao, Xiangzhen Li
Abstract
The article provides a pipeline for comparing microbial co-occurrence networks based on the R microeco package and meconetcomp package. It has high flexibility and expansibility and can help users efficiently compare networks built from different groups of samples or different construction approaches.
Topics & Concepts
Environmental chemistryEnvironmental scienceComputational biologyComputer scienceChemistryBiologyGut microbiota and healthMicrobial Community Ecology and PhysiologyBioinformatics and Genomic Networks