A Machine-Learning Protocol for Ultraviolet Protein-Backbone Absorption Spectroscopy under Environmental Fluctuations
Jinxiao Zhang, Sheng Ye, Kai Zhong, Yaolong Zhang, Yuanyuan Chong, Luyuan Zhao, Huiting Zhou, Sibei Guo, Guozhen Zhang, Bin Jiang, Shaul Mukamel, Jun Jiang
Abstract
Ultraviolet (UV) absorption spectra are commonly used for characterizing the global structure of proteins. However, the theoretical interpretation of UV spectra is hindered by the large number of required expensive ab initio calculations of excited states spanning a huge conformation space. We present a machine-learning (ML) protocol for far-UV (FUV) spectra of proteins, which can predict FUV spectra of proteins with comparable accuracy to density functional theory (DFT) calculations but with 3-4 orders of magnitude reduced computational cost. It further shows excellent predictive power and transferability that can be used to probe structural mutations and protein folding pathways.