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Chromosome-level genome assembly of the caenogastropod snail Rapana venosa

Hao Song, Zhuoqing Li, Mei‐Jie Yang, Shi Pu, Zheng‐Lin Yu, Zhi Hu, Cong Zhou, Pengpeng Hu, Tao Zhang

2023Scientific Data13 citationsDOIOpen Access PDF

Abstract

The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control.

Topics & Concepts

BiologyGenomeSequence assemblyChromosomeSnailIllumina dye sequencingGeneticsGenome sizeGeneLoss of heterozygosityEvolutionary biologyComputational biologyEcologyTranscriptomeAlleleGene expressionGenomics and Phylogenetic StudiesParasite Biology and Host InteractionsMarine Ecology and Invasive Species