BioKGrapher: Initial evaluation of automated knowledge graph construction from biomedical literature
Henning Schäfer, Ahmad Idrissi-Yaghir, Kamyar Arzideh, Hendrik Damm, Tabea M. G. Pakull, Cynthia Sabrina Schmidt, Mikel Bahn, Georg Lodde, Elisabeth Livingstone, Dirk Schadendorf, Felix Nensa, Péter Horn, Christoph M. Friedrich
Abstract
BioKGrapher is a tool for automatic KG construction, aligning with the GGPO and enhancing downstream task performance. It offers a scalable solution for managing biomedical knowledge, with potential applications in literature recommendation, decision support, and drug repurposing.
Topics & Concepts
Computer scienceGraphKnowledge graphData miningData scienceComputational biologyInformation retrievalTheoretical computer scienceBiologyBiomedical Text Mining and OntologiesGenetics, Bioinformatics, and Biomedical ResearchBioinformatics and Genomic Networks