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Ilm-NMR-P31: an open-access 31P nuclear magnetic resonance database and data-driven prediction of 31P NMR shifts

Jasmin Hack, M. M. Jordan, Alina Schmitt, Melissa Raru, Hannes Sönke Zorn, Alex Seyfarth, Isabel Eulenberger, Robert Geitner

2023Journal of Cheminformatics10 citationsDOIOpen Access PDF

Abstract

Abstract This publication introduces a novel open-access 31 P Nuclear Magnetic Resonance (NMR) shift database. With 14,250 entries encompassing 13,730 distinct molecules from 3,648 references, this database offers a comprehensive repository of organic and inorganic compounds. Emphasizing single-phosphorus atom compounds, the database facilitates data mining and machine learning endeavors, particularly in signal prediction and Computer-Assisted Structure Elucidation (CASE) systems. Additionally, the article compares different models for 31 P NMR shift prediction, showcasing the database’s potential utility. Hierarchically Ordered Spherical Environment (HOSE) code-based models and Graph Neural Networks (GNNs) perform exceptionally well with a mean squared error of 11.9 and 11.4 ppm respectively, achieving accuracy comparable to quantum chemical calculations.

Topics & Concepts

Computer scienceChemical shiftAtom (system on chip)Data miningOrganic moleculesNuclear magnetic resonance spectroscopyDatabaseMoleculeChemistryArtificial intelligenceNuclear magnetic resonancePhysicsPhysical chemistryEmbedded systemOrganic chemistryComputational Drug Discovery MethodsMetabolomics and Mass Spectrometry StudiesMolecular spectroscopy and chirality
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