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Specificity of AMPylation of the human chaperone BiP is mediated by TPR motifs of FICD

Joel Fauser, Burak Gulen, Vivian Pogenberg, Christian Pett, Danial Pourjafar‐Dehkordi, Christoph Krisp, Dorothea Höpfner, Gesa König, Hartmut Schlüter, Matthias J. Feige, Martin Zacharias, Christian Hedberg, Aymelt Itzen

2021Nature Communications33 citationsDOIOpen Access PDF

Abstract

To adapt to fluctuating protein folding loads in the endoplasmic reticulum (ER), the Hsp70 chaperone BiP is reversibly modified with adenosine monophosphate (AMP) by the ER-resident Fic-enzyme FICD/HYPE. The structural basis for BiP binding and AMPylation by FICD has remained elusive due to the transient nature of the enzyme-substrate-complex. Here, we use thiol-reactive derivatives of the cosubstrate adenosine triphosphate (ATP) to covalently stabilize the transient FICD:BiP complex and determine its crystal structure. The complex reveals that the TPR-motifs of FICD bind specifically to the conserved hydrophobic linker of BiP and thus mediate specificity for the domain-docked conformation of BiP. Furthermore, we show that both AMPylation and deAMPylation of BiP are not directly regulated by the presence of unfolded proteins. Together, combining chemical biology, crystallography and biochemistry, our study provides structural insights into a key regulatory mechanism that safeguards ER homeostasis.

Topics & Concepts

AdenylylationChaperone (clinical)Endoplasmic reticulumChemistryProtein foldingUnfolded protein responseAdenosine triphosphateAdenosine monophosphateBiochemistryStructural biologyHydrolaseProtein structureEnzymePlasma protein bindingLinkerAllosteric regulationBiophysicsCell biologyBiologyBiosynthesisMedicinePathologyOperating systemComputer scienceHeat shock proteins researchEndoplasmic Reticulum Stress and DiseaseEnzyme Structure and Function