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Tackling the SARS-CoV-2 main protease using hybrid derivatives of 1,5-disubstituted tetrazole-1,2,3-triazoles: an in silico assay

Carlos J. Cortés‐García, Luis Chacón-Garcı́a, Jorge Emmanuel Mejía Benavides, Erik Díaz‐Cervantes

2020PeerJ Physical Chemistry34 citationsDOIOpen Access PDF

Abstract

In regard to the actual public health global emergency and, based on the state of the art about the ways to inhibit the SARS-CoV-2 treating the COVID19, a family of 1,5-disubstituted tetrazole-1,2,3-triazoles, previously synthesized, have been evaluated through in silico assays against the main protease of the mentioned virus (CoV-2-M Pro ). The results show that three of these compounds present a more favorable interaction with the selected target than the co-crystallized molecule, which is a peptide-like derivative. It was also found that also hydrophobic interactions play a key role in the ligand-target molecular couplings, due to the higher hydrophobic surfaces into the active site. Finally, a pharmacophore model has been proposed based on the results below, and a family of 1,5-DT derivatives has been designed and tested with the same methods employed in this work. It was concluded that the compound with the isatin as a substituent (P8) present the higher ligand-target interaction, which makes this a strong drug candidate against COVID19, due can inhibit the CoV-2-M Pro protein.

Topics & Concepts

PharmacophoreIn silicoTetrazoleSubstituentProteaseChemistryCombinatorial chemistryLigand (biochemistry)Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)IsatinCoronavirus disease 2019 (COVID-19)Computational biologyPeptideStereochemistryBiochemistryBiologyReceptorEnzymeOrganic chemistryGeneMedicinePathologyInfectious disease (medical specialty)DiseaseSARS-CoV-2 and COVID-19 ResearchComputational Drug Discovery MethodsTuberculosis Research and Epidemiology