DNA Features Viewer: a sequence annotation formatting and plotting library for Python
Valentin Zulkower, Susan J. Rosser
Abstract
MOTIVATION: Although the Python programming language counts many Bioinformatics and Computational Biology libraries; none offers customizable sequence annotation visualizations with layout optimization. RESULTS: DNA Features Viewer is a sequence annotation plotting library which optimizes plot readability while letting users tailor other visual aspects (colors, labels, highlights etc.) to their particular use case. AVAILABILITY AND IMPLEMENTATION: Open-source code and documentation are available on Github under the MIT license (https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Topics & Concepts
Disk formattingPython (programming language)AnnotationComputer scienceSequence (biology)Computer graphics (images)Computational biologySoftwareWorld Wide WebProgramming languageBiologyGeneticsArtificial intelligenceOperating systemGenomics and Phylogenetic StudiesComputational Physics and Python ApplicationsGenetics, Bioinformatics, and Biomedical Research