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Assessment of the Higher‐Order Structure of Formulated Monoclonal Antibody Therapeutics by 2D Methyl Correlated NMR and Principal Component Analysis

Luke W. Arbogast, Frank Delaglio, Robert G. Brinson, John P. Marino

2020Current Protocols in Protein Science16 citationsDOIOpen Access PDF

Abstract

Abstract Characterization of the higher‐order structure (HOS) of protein therapeutics, and in particular of monoclonal antibodies, by 2D 1 H‐ 13 C methyl correlated NMR has been demonstrated as precise and robust. Such characterization can be greatly enhanced when collections of spectra are analyzed using multivariate approaches such as principal component analysis (PCA), allowing for the detection and identification of small structural differences in drug substance that may otherwise fall below the limit of detection of conventional spectral analysis. A major limitation to this approach is the presence of aliphatic signals from formulation or excipient components, which result in spectral interference with the protein signal of interest; however, the recently described S elect i ve E xcipient R eduction and R emov a l (SIERRA) filter greatly reduces this issue. Here we will outline how basic 2D 1 H‐ 13 C methyl−correlated NMR may be combined with the SIERRA approach to collect ‘clean’ NMR spectra of formulated monoclonal antibody therapeutics (i.e., drug substance spectra free of interfering component signals), and how series of such spectra may be used for HOS characterization by direct PCA of the series spectral matrix. © 2020 U.S. Government. Basic Protocol 1 : NMR data acquisition Basic Protocol 2 : Full spectral matrix data processing and analysis Support Protocol : Data visualization and cluster analysis

Topics & Concepts

Principal component analysisMonoclonal antibodyComponent (thermodynamics)ChemistryComputational biologyOrder (exchange)AntibodyBiologyComputer scienceImmunologyPhysicsArtificial intelligenceBusinessFinanceThermodynamicsProtein purification and stabilityAdvanced NMR Techniques and ApplicationsAnalytical Chemistry and Chromatography