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Elucidating Structures of Complex Organic Compounds Using a Machine Learning Model Based on the <sup>13</sup>C NMR Chemical Shifts

Anan Wu, Qing Ye, Xiaowei Zhuang, Qiwen Chen, Jinkun Zhang, Jianming Wu, Xin Xu

2023Precision Chemistry23 citationsDOIOpen Access PDF

Abstract

High Resolution Image Download MS PowerPoint Slide We present a protocol that combines the support vector machine (SVM) model with accurate 13 C chemical shift calculations at the xOPBE/6-311+G(2d,p) level of theory, denoted as SVM-M (i.e., SVM for magnetic property). We show here that this SVM-M protocol is a versatile tool for identifying the structural and stereochemical assignment of complex organic compounds with high confidence. Of particular significance is that, by utilizing the dual role of the decision values in SVM, the present SVM-M protocol provides an accurate yet efficient solution to simultaneously handle the classification issue (i.e., “is a given structure correct or incorrect?”) and the comparison-based problem (i.e., “which structure is more likely to be correct or wrong among several candidate structures?”). A significantly high success rate has been reached (i.e., ∼100% on a set of 760 sample molecules with 15928 13 C chemical shifts), which makes the SVM-M protocol a powerful tool for routine applications in structural and stereochemical assignments, as well as in detecting mis-assignments, for complex organic compounds, including natural products.

Topics & Concepts

Support vector machineProtocol (science)Artificial intelligenceComputer scienceChemical shiftDual (grammatical number)Set (abstract data type)Data setMachine learningQuantitative structure–activity relationshipChemistryData miningPattern recognition (psychology)Physical chemistryProgramming languagePathologyAlternative medicineArtMedicineLiteratureMolecular spectroscopy and chiralityMetabolomics and Mass Spectrometry StudiesComputational Drug Discovery Methods
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