kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq
Delaney K. Sullivan, Kyung Hoi Min, Kristján Eldjárn Hjörleifsson, Laura Luebbert, Guillaume Holley, Lambda Moses, Johan Gustafsson, Nicolas Bray, Harold Pimentel, A. Sina Booeshaghi, Páll Melsted, Lior Pachter
Topics & Concepts
Python (programming language)RNAComputational biologyRNA-SeqWorkflowComputer scienceBiologyGene expressionGeneTranscriptomeGeneticsDatabaseOperating systemSingle-cell and spatial transcriptomicsRNA modifications and cancerGene expression and cancer classification