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Design, synthesis and biological evaluation of novel histone deacetylase (HDAC) inhibitors derived from <i>β</i> -elemene scaffold

Yuan Gao, Ji‐Long Duan, Xiawen Dang, Yinghui Yuan, Yu Wang, Xingrui He, Renren Bai, Xiang‐Yang Ye, Tian Xie

2023Journal of Enzyme Inhibition and Medicinal Chemistry59 citationsDOIOpen Access PDF

Abstract

β-Elemene is the major active ingredient of TCM anticancer drug elemene extracts. To further improve its antitumor activity and poor solubility, a polar HDACi pharmacophore was incorporated its scaffold. Systematic SAR studies led to the discovery of compounds 27f and 39f, which exhibited potent inhibitory activity against HDACs (HDAC1: IC50 = 22 and 9 nM; HDAC6: 8 and 14 nM, respectively). In cellular levels, 27f and 39f significantly inhibited cell proliferation of five tumour cell lines (IC50: 0.79 - 4.42 µM). Preliminary mechanistic studies indicated that 27f and 39f efficiently induced cell apoptosis. Unexpectedly, compound 39f could also stimulate cell cycle arrest in G1 phase. Further in vivo study in WSU-DLCL-2 xenografted mouse model validated the antitumor activities of 27f, without significant toxicity. The results suggest the therapeutic potential of these HDACs inhibitors in lymphoma and provide valuable insight and understanding for further structural optimisation around β-elemene scaffold.

Topics & Concepts

HDAC6Histone deacetylasePharmacophoreChemistryIn vivoScaffoldCell growthCell cycle checkpointHDAC1ApoptosisIC50Cell cyclePharmacologyCancer researchBiochemistryIn vitroHistoneBiologyMedicineGeneBiomedical engineeringBiotechnologyHistone Deacetylase Inhibitors ResearchPeptidase Inhibition and AnalysisProtein Degradation and Inhibitors
Design, synthesis and biological evaluation of novel histone deacetylase (HDAC) inhibitors derived from <i>β</i> -elemene scaffold | Litcius