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Size‐Extensive Molecular Machine Learning with Global Representations

Hyunwook Jung, Sina Stocker, Christian Künkel, Harald Oberhofer, Byungchan Han, Karsten Reuter, Johannes T. Margraf

2020ChemSystemsChem44 citationsDOIOpen Access PDF

Abstract

Abstract Machine learning (ML) models are increasingly used in combination with electronic structure calculations to predict molecular properties at a much lower computational cost in high‐throughput settings. Such ML models require representations that encode the molecular structure, which are generally designed to respect the symmetries and invariances of the target property. However, size‐extensivity is usually not guaranteed for so‐called global representations. In this contribution, we show how extensivity can be built into global ML models using, e. g ., the Many‐Body Tensor Representation. Properties of extensive and non‐extensive models for the atomization energy are systematically explored by training on small molecules and testing on small, medium and large molecules. Our results show that non‐extensive models are only useful in the size‐range of their training set, whereas extensive models provide reasonable predictions across large size differences. Remaining sources of error for extensive models are discussed.

Topics & Concepts

Computer scienceRepresentation (politics)Range (aeronautics)Set (abstract data type)Property (philosophy)Tensor (intrinsic definition)Theoretical computer scienceMachine learningArtificial intelligenceStatistical physicsMathematicsPhysicsMaterials scienceGeometryLawPolitical sciencePoliticsComposite materialEpistemologyProgramming languagePhilosophyMachine Learning in Materials ScienceProtein Structure and DynamicsComputational Drug Discovery Methods